Systems Biology - Interdisciplinary Biology Research at the Five Colleges

SysBio.SysBio History

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February 06, 2006, at 09:57 PM by Jeff Blanchard
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Bioinformatics Spring 2006 Course

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Bioinformatics Spring 2006 Courses

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Jeff Blanchard is offering a hands on Bioinformatics Lab course MICROBIO 590B designed to help students become familiar with existing bioinformatic tools and resources and to learn to write computer programs to test hypotheses and solve biological problems.

December 19, 2005, at 04:54 PM by Ram Mettu
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Ram Mettu in Electrical and Computer Engineering will be offering a special seminar course, Topics in Computational Biology, E&C-ENG 697S. Ram's research area is mass spectrometry for resolving protein structures.

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Ram Mettu in Electrical and Computer Engineering will be offering a special seminar course, Topics in Computational Biology, E&C-ENG 697S. Ram's research area is computational structural biology; he has most recently been working on algorithms for automated analysis of Nuclear Magnetic Resonance (NMR) data.

December 14, 2005, at 10:40 PM by dkulp
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CB SIG Meeting on December 12

Arnie Hagler, Adjunct Prof, Chemistry, U Mass, and Founder and Chairman of Science Media?, will talk to us about "Simulations of Biological Macromolecules"

Bioinformatics Fall 2005

David Kulp, Jeff Blanchard, and Erin Conlon will be teaching a cross-listed introductory bioinformatics course this fall.

Major Systems Biology Conference in Boston

The Sixth International Conference on Systems Biology (ICSB 2005) will be in Boston in October.

to:

Bioinformatics Spring 2006 Course

Ram Mettu in Electrical and Computer Engineering will be offering a special seminar course, Topics in Computational Biology, E&C-ENG 697S. Ram's research area is mass spectrometry for resolving protein structures.

November 30, 2005, at 11:40 AM by dkulp
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CB SIG Meeting on December 12

Arnie Hagler, Adjunct Prof, Chemistry, U Mass, and Founder and Chairman of Science Media?, will talk to us about "Simulations of Biological Macromolecules"

October 07, 2005, at 12:40 AM by dkulp
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3rd CB SIG Meeting Scheduled for September 15

The next meeting of the Computational Biology SIG is planned for September 15 at 5:30pm in the U Mass Amherst Computer Science Building. Our speakers will include Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Michael Brudno of the University of Toronto will discuss comparative genomics. There will be free pizza. Read more...

August 30, 2005, at 11:25 PM by dkulp
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3rd CB SIG Meeting Scheduled for September 15

The next meeting of the Computational Biology SIG is planned for September 15 at 5:30pm in the U Mass Amherst Computer Science Building. Our speakers will include Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Michael Brudno of the University of Toronto will discuss comparative genomics. There will be free pizza. Read more...

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Systems Biology Conferences

Two system biology conferences will take place in 2005: Foundations of Systems Biology and Engineering (FOSBE 2005) and Sixth International Conference on Systems Biology (ICSB 2005)

3rd CB SIG Meeting Scheduled for September 15

The next meeting of the Computational Biology SIG is tentatively planned for September 15 at 5:30pm in the U Mass Amherst Computer Science Building. Our speakers will include Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT. There will be food.

to:

Major Systems Biology Conference in Boston

The Sixth International Conference on Systems Biology (ICSB 2005) will be in Boston in October.

August 22, 2005, at 02:31 PM by dkulp
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David Kulp, Jeff Blanchard, and Erin Conlon will be teaching a cross-listed introductory bioinformatics course this fall.

to:

David Kulp, Jeff Blanchard, and Erin Conlon will be teaching a cross-listed introductory bioinformatics course this fall.

August 22, 2005, at 02:29 PM by dkulp
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Bioinformatics Fall 2005

David Kulp, Jeff Blanchard, and Erin Conlon will be teaching a cross-listed introductory bioinformatics course this fall.

August 22, 2005, at 02:18 PM by dkulp
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The next meeting of the Computational Biology SIG is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

to:

The next meeting of the Computational Biology SIG is tentatively planned for September 15 at 5:30pm in the U Mass Amherst Computer Science Building. Our speakers will include Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT. There will be food.

June 17, 2005, at 03:31 PM by dkulp
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The next meeting of the Computational Biology SIG is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

to:

The next meeting of the Computational Biology SIG is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

June 17, 2005, at 03:24 PM by dkulp
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The next meeting of the Computational Biology SIG? is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

to:

The next meeting of the Computational Biology SIG is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

June 17, 2005, at 03:23 PM by dkulp
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The next meeting of the Computational Biology SIG is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

to:

The next meeting of the Computational Biology SIG? is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

June 17, 2005, at 03:13 PM by dkulp
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2nd SysBio/BioInfo SIG Meeting June 16

The next meeting of the Systems Biology and Bioinformatics SIG will be held at 5:30pm on June 16 in room 151 in the Computer Science Building at U Mass Amherst. Speakers will be Asst Prof Oliver Brock speaking on "Computational methods for protein structure prediction in the context of the Protein Structure Initiative" and Dave Wilson, VP of Sofware Engineering at Protedyne, speaking on "Integrating LIMS in the context of closed-loop cherry picking".

to:

3rd CB SIG Meeting Scheduled for September 15

The next meeting of the Computational Biology SIG is tentatively planned for September 15. Location TBD. Tentative speakers are Bob Handsaker of Charlemont Software about his work with the Broad Institute at MIT and Arnie Hagler from U Mass on rational drug design. Stay tuned for updates.

June 16, 2005, at 02:54 PM by dkulp
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The next meeting of the Systems Biology and Bioinformatics SIG will be held at 5:30pm on June 16 in room 151 in the Computer Science Building at U Mass Amherst. Speakers will be Asst Prof Oliver Brock speaking on "Computational methods for protein structure prediction in the context of the Protein Structure Initiative" and Dave Wilson, VP of Sofware Engineering at Protodyne, speaking on "Integrating LIMS in the context of closed-loop cherry picking".

to:

The next meeting of the Systems Biology and Bioinformatics SIG will be held at 5:30pm on June 16 in room 151 in the Computer Science Building at U Mass Amherst. Speakers will be Asst Prof Oliver Brock speaking on "Computational methods for protein structure prediction in the context of the Protein Structure Initiative" and Dave Wilson, VP of Sofware Engineering at Protedyne, speaking on "Integrating LIMS in the context of closed-loop cherry picking".

May 30, 2005, at 09:46 AM by dkulp
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The next meeting of the Systems Biology and Bioinformatics SIG will be held at 5:30pm on June 16 in room 151 in the Computer Science Building at U Mass Amherst. Speakers will be Asst Prof Oliver Brock speaking on the structural biology intiative and Dave Wilson, VP of Sofware Engineering at Protodyne, will speak on "integrating LIMS in the context of closed-loop cherry picking".

to:

The next meeting of the Systems Biology and Bioinformatics SIG will be held at 5:30pm on June 16 in room 151 in the Computer Science Building at U Mass Amherst. Speakers will be Asst Prof Oliver Brock speaking on "Computational methods for protein structure prediction in the context of the Protein Structure Initiative" and Dave Wilson, VP of Sofware Engineering at Protodyne, speaking on "Integrating LIMS in the context of closed-loop cherry picking".

May 26, 2005, at 05:07 PM by dkulp
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Genetic Networks Discussion Group

Jeff Blanchard (Microbio) is organizing a semi-monthly meeting to discuss current research related to genetic networks. (more...)

Spring 2005 Lecture Series

Update: there was discussion of having a Sys Bio weekly Lecture Series this Spring, but since Jeff is running a discussion group, we'll postpone for another time.

Spring 2005 Molecular and Systems Biotechnology Course

Michael Henson and Lianhong Sun (UMass Chemical Engineering) are teaching a new systems biology course in this spring. (more...)

Spring 2005 Course on Computational Methods in Structural Molecular Biology

This seminar explores the connections between computer science and molecular biology by presenting a mixture of necessary background knowledge from both fields and current research bridging these disciplines.
(more)

to:

2nd SysBio/BioInfo SIG Meeting June 16

The next meeting of the Systems Biology and Bioinformatics SIG will be held at 5:30pm on June 16 in room 151 in the Computer Science Building at U Mass Amherst. Speakers will be Asst Prof Oliver Brock speaking on the structural biology intiative and Dave Wilson, VP of Sofware Engineering at Protodyne, will speak on "integrating LIMS in the context of closed-loop cherry picking".

March 30, 2005, at 10:40 AM by 128.119.242.30
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Systems Biology Seminar

March 22 – John Tyson, Virginia Polytechnic Institute and State University, "Network Dynamics and Cell Physiology”, MCB Seminar Program, 101 Lederle Graduate Research Tower, 4 pm (refreshments at 3:45 pm)

March 25, 2005, at 03:02 PM by 128.119.59.206
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March 25, 2005, at 03:01 PM by 128.119.59.206
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March 25, 2005, at 02:59 PM by 128.119.59.206
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March 25, 2005, at 02:58 PM by 128.119.59.206
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lkjsdflkjsdf

March 17, 2005, at 04:37 PM by 128.119.82.93
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March 22 – John Tyson, Virginia Polytechnic Institute and State University, "Network Dynamics and Cell Physiology”, MCB Seminar Program, 101 Lederle Graduate Research Tower, 4 pm (Refreshments at 3:45 p.m)

to:

March 22 – John Tyson, Virginia Polytechnic Institute and State University, "Network Dynamics and Cell Physiology”, MCB Seminar Program, 101 Lederle Graduate Research Tower, 4 pm (refreshments at 3:45 pm)

March 17, 2005, at 04:36 PM by 128.119.82.93
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Systems Biology Seminar

March 22 – John Tyson, Virginia Polytechnic Institute and State University, "Network Dynamics and Cell Physiology”, MCB Seminar Program, 101 Lederle Graduate Research Tower, 4 pm (Refreshments at 3:45 p.m)

March 04, 2005, at 05:25 PM by 24.63.115.69
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Western Massachusetts Bioinformatics SIG

A special interest group for the "Knowledge Corrider" will have a kick-off meeting on Thursday, March 3, 2005 at 5:30pm at UMass.
(more...)

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March 01, 2005, at 11:01 PM by 68.112.236.178
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Sixth International Conference on Systems Biology (ICSB 2005)

to:

Sixth International Conference on Systems Biology (ICSB 2005)

March 01, 2005, at 11:01 PM by 68.112.236.178
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Six International Conference on Systems Biology (ICSB 2005)

to:

Sixth International Conference on Systems Biology (ICSB 2005)

March 01, 2005, at 11:00 PM by 68.112.236.178
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Two system biology conferences will take place in 2005. Foundations of Systems Biology and Engineering (FOSBE 2005)

to:

Two system biology conferences will take place in 2005: Foundations of Systems Biology and Engineering (FOSBE 2005) and

March 01, 2005, at 10:59 PM by 68.112.236.178
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Systems Biology Conferences

Two system biology conferences will take place in 2005. Foundations of Systems Biology and Engineering (FOSBE 2005) Six International Conference on Systems Biology (ICSB 2005)

February 09, 2005, at 11:59 AM by 128.119.242.30
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A special interest group for the "Knowledge Corrider" will have a kick-off meeting on Thursday, February 10, 2005. \\

to:

A special interest group for the "Knowledge Corrider" will have a kick-off meeting on Thursday, March 3, 2005 at 5:30pm at UMass. \\

February 02, 2005, at 08:45 PM by 128.119.232.210
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Jeff Blanchard (Microbio) is organizing a semi-monthly meeting to discuss current research related to genetic networks.

The focus will be primarily on recent research related to genetic variation, gene interaction networks and phenotypes. Our first get together will be next Wednesday at 3pm in the Microbiology Conference Morrill IVN 202. We will meet every other week. Come join us, bring a paper to discuss or just sit in. We will start off with a review paper by Nobel Prize winner Lee Hartwell and include in the discussion ideas from his 1999 paper that catalyzed the modern Systems Biology field.

to:

Jeff Blanchard (Microbio) is organizing a semi-monthly meeting to discuss current research related to genetic networks. (more...)

February 02, 2005, at 06:02 PM by 128.119.242.30
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Western Massachusetts Bioinformatics SIG

A special interest group for the "Knowledge Corrider" will have a kick-off meeting on Thursday, February 10, 2005.
(more...)

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Western Massachusetts Bioinformatics SIG

A special interest group for the "Knowledge Corrider" will have a kick-off meeting on February 10, 2005.
(more...)

to:

February 02, 2005, at 06:01 PM by 128.119.242.30
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We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.
(more...?)

to:

Update: there was discussion of having a Sys Bio weekly Lecture Series this Spring, but since Jeff is running a discussion group, we'll postpone for another time.

January 26, 2005, at 09:36 PM by 24.63.115.69
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"The focus will be primarily on recent research related to genetic variation, gene interaction networks and phenotypes. Our first get together will be next Wednesday at 3pm in the Microbiology Conference Morrill IVN 202. We will meet every other week. Come join us, bring a paper to discuss or just sit in. We will start off with a review paper by Nobel Prize winner Lee Hartwell and include in the discussion ideas from his 1999 paper that catalyzed the modern Systems Biology field."

to:
The focus will be primarily on recent research related to genetic variation, gene interaction networks and phenotypes. Our first get together will be next Wednesday at 3pm in the Microbiology Conference Morrill IVN 202. We will meet every other week. Come join us, bring a paper to discuss or just sit in. We will start off with a review paper by Nobel Prize winner Lee Hartwell and include in the discussion ideas from his 1999 paper that catalyzed the modern Systems Biology field.

January 26, 2005, at 09:36 PM by 24.63.115.69
Added lines 13-17:

Genetic Networks Discussion Group

Jeff Blanchard (Microbio) is organizing a semi-monthly meeting to discuss current research related to genetic networks.

"The focus will be primarily on recent research related to genetic variation, gene interaction networks and phenotypes. Our first get together will be next Wednesday at 3pm in the Microbiology Conference Morrill IVN 202. We will meet every other week. Come join us, bring a paper to discuss or just sit in. We will start off with a review paper by Nobel Prize winner Lee Hartwell and include in the discussion ideas from his 1999 paper that catalyzed the modern Systems Biology field."

December 13, 2004, at 09:13 PM by 24.91.226.63
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Molecular and Systems Biotechnology Course

to:

Spring 2005 Molecular and Systems Biotechnology Course

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Course on Computational Methods in Structural Molecular Biology

to:

Spring 2005 Course on Computational Methods in Structural Molecular Biology

December 13, 2004, at 05:34 PM by OliverBrock
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Course on Computational Methods in Structural Molecular Biology

This seminar explores the connections between computer science and molecular biology by presenting a mixture of necessary background knowledge from both fields and current research bridging these disciplines.
(more)

December 13, 2004, at 02:51 PM by 128.119.82.93
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Michael Henson and Lianhong Sun (U Mass Chemical Engineering) are teaching a new systems biology course in this spring. (more...)

to:

Michael Henson and Lianhong Sun (UMass Chemical Engineering) are teaching a new systems biology course in this spring. (more...)

December 13, 2004, at 02:48 PM by 128.119.82.93
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Michael Henson and Lianhong Sun are teaching a new systems biology course in this spring. (more...)

to:

Michael Henson and Lianhong Sun (U Mass Chemical Engineering) are teaching a new systems biology course in this spring. (more...)

December 13, 2004, at 02:47 PM by 128.119.82.93
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Michael Henson is teaching a dynamic systems class in the spring. (more...)

to:

Michael Henson and Lianhong Sun are teaching a new systems biology course in this spring. (more...)

December 13, 2004, at 02:39 PM by 128.119.82.93
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Molecular and Systems Biology Course

to:

Molecular and Systems Biotechnology Course

December 10, 2004, at 11:50 PM by 24.91.226.63
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The Systems Biology (Sys Bio) group is a five college-wide organization concerned with research and training in biological systems. Broadly we define systems biology to incorporate the study of complex biological phenomenon by means of interdisciplinary activities in computer science, mathematics,

to:

The Systems Biology (Sys Bio) group is a five college-wide organization concerned with research and training in the computational aspects of biological systems. Broadly we define systems biology to incorporate the study of complex biological phenomenon by means of interdisciplinary activities in computer science, mathematics,

December 10, 2004, at 11:50 PM by 24.91.226.63
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This website serves to refer visitors to domain-specific activities among the Five Colleges (Amherst, Hampshire, Mt Holyoke, Smith, and University of Massachusetts Amherst).

to:

This website serves the Five Colleges (Amherst, Hampshire, Mt Holyoke, Smith, and University of Massachusetts Amherst) with information on research, training, resources, and local industry-academia connections.

December 10, 2004, at 10:36 PM by 24.91.226.63
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Michael Henson is teaching a dynamic systems class in the spring. (More info?)

to:

Michael Henson is teaching a dynamic systems class in the spring. (more...)

December 10, 2004, at 04:15 PM by 128.119.242.30
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We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp«æ»cs·umass·edu. \\

to:

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu. \\

December 10, 2004, at 04:14 PM by 128.119.242.30
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We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu. \\

to:

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp«æ»cs·umass·edu. \\

December 10, 2004, at 03:04 PM by 128.119.242.30
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This website serves to refer visitors to domain-specific activities among the Five Colleges (Amherst, Hampshire, Mt Holyoke, Smith, and University of Massachusetts Amherst).

to:

This website serves to refer visitors to domain-specific activities among the Five Colleges (Amherst, Hampshire, Mt Holyoke, Smith, and University of Massachusetts Amherst).

December 10, 2004, at 03:03 PM by 128.119.242.30
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We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu. (more...?)

to:

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.
(more...?)

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A special interest group for the "Knowledge Corrider" will have a kick-off meeting on February 10, 2005. (more...)

to:

A special interest group for the "Knowledge Corrider" will have a kick-off meeting on February 10, 2005.
(more...)

December 10, 2004, at 03:02 PM by 128.119.242.30
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We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.

to:

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu. (more...?)

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to:

Western Massachusetts Bioinformatics SIG

A special interest group for the "Knowledge Corrider" will have a kick-off meeting on February 10, 2005. (more...)

December 10, 2004, at 02:42 PM by 128.119.242.30
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The Systems Biology (Sys Bio) group is a five college-wide organization concerned with research and training in systems biology. Broadly we define systems biology to incorporate the study of complex biological phenomenon by means of interdisciplinary activities in computer science, mathematics,

to:

The Systems Biology (Sys Bio) group is a five college-wide organization concerned with research and training in biological systems. Broadly we define systems biology to incorporate the study of complex biological phenomenon by means of interdisciplinary activities in computer science, mathematics,

December 10, 2004, at 12:01 AM by 24.91.226.63
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Regulatory Networks

to:

Molecular and Systems Biology Course

December 09, 2004, at 11:54 PM by 24.91.226.63
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!! Spring 2005 Lecture Series

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Spring 2005 Lecture Series

December 09, 2004, at 11:53 PM by 24.91.226.63
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Spring 2005 Lecture Series

to:
!! Spring 2005 Lecture Series

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subscribe sysbio
to:
subscribe sysbio
December 09, 2004, at 11:53 PM by 24.91.226.63
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Michael Henson is teaching a dynamic systems class in the spring

to:

Regulatory Networks

Michael Henson is teaching a dynamic systems class in the spring. (More info?)

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December 09, 2004, at 11:51 PM by 24.91.226.63
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Announcements

Spring 2005 Lecture Series

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.

Michael Henson is teaching a dynamic systems class in the spring

Research Groups

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Spring 2005 Lecture Series

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.

Research Activities

December 09, 2004, at 05:23 PM by 128.119.59.197
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We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.

to:

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.

December 09, 2004, at 04:00 PM by 128.119.242.30
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Spring 2005 Lecture Series

We are beginning planning for a Sys Bio weekly lecture series (Sys Bio Lecture Series 2005?) in the spring of 2005. If you are interested to speak please email dkulp «æ» cs·umass·edu.

Research Activities

December 09, 2004, at 03:56 PM by 128.119.242.30
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Systems Biology (Sys Bio)

to:

Welcome

The Systems Biology (Sys Bio) group is a five college-wide organization concerned with research and training in systems biology. Broadly we define systems biology to incorporate the study of complex biological phenomenon by means of interdisciplinary activities in computer science, mathematics, statistics, and engineering. As an umbrella group, Sys Bio promotes research and training in diverse sub-disciplines such as bioinformatics, computational neurobiology, and metabolic engineering. It also promotes regional academic and industry collaborations. We are a loosely affiliated group of educators, researchers, and students who maintain a mailing list, run this informational website, and occassionally run a lecture series.

This website serves to refer visitors to domain-specific activities among the Five Colleges (Amherst, Hampshire, Mt Holyoke, Smith, and University of Massachusetts Amherst).

Mailing List

To join a mailing list of over 250 interested researchers, send email to

majordomo@cs.umass.edu

and include in the body of your email

subscribe sysbio
December 09, 2004, at 01:10 PM by 128.119.242.30
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to:

Systems Biology (Sys Bio)

December 09, 2004, at 01:05 PM by 128.119.242.30
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