Sysbio.ResearchGroups History
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September 22, 2009, at 11:33 AM
by E Kalt
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September 22, 2009, at 11:31 AM
by E Kalt
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February 14, 2005, at 01:32 PM
by Eric Martz
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Eric Martz (UMass Microbiology) and his group develop macromolecular 3D structure visualization software for education and researchers, notably ProteinExplorer.org, the ConSurf Server for identifying evolutionarily conserved surface patches on proteins, and the The World Index of Molecular Visualization Resources, which along with many other educational tutorials are available through MolviZ.Org.
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Eric Martz (UMass Microbiology) and his group develop macromolecular 3D structure visualization software for education and researchers, notably ProteinExplorer.org, the ConSurf Server for identifying evolutionarily conserved surface patches on proteins, and the The World Index of Molecular Visualization Resources, which along with many other educational tutorials are available through the U Mass umbrella site MolviZ.Org.
February 10, 2005, at 09:00 AM
by Eric Martz
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Lila Gierasch group in (UMass Biochemistry) studies how amino acid sequence determines the three-dimensional structure of a protein. This problem is addressed in the laboratory through the study of how conformational preferences of model peptides guides folding. Detailed studies of in vitro folding of a predominantly b-sheet protein with a very simple topology are also carried out. Methods of use in all of the folding work include circular dichroism, fluorescence, and nuclear magnetic resonance.
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Lila Gierasch group in (UMass Biochemistry) studies how amino acid sequence determines the three-dimensional structure of a protein. This problem is addressed in the laboratory through the study of how conformational preferences of model peptides guides folding. Detailed studies of in vitro folding of a predominantly b-sheet protein with a very simple topology are also carried out. Methods of use in all of the folding work include circular dichroism, fluorescence, and nuclear magnetic resonance.
Martz Group
Eric Martz (UMass Microbiology) and his group develop macromolecular 3D structure visualization software for education and researchers, notably ProteinExplorer.org, the ConSurf Server for identifying evolutionarily conserved surface patches on proteins, and the The World Index of Molecular Visualization Resources, which along with many other educational tutorials are available through MolviZ.Org.
December 13, 2004, at 02:52 PM
by 128.119.82.93
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Mike Henson's group (UMass Chemical Engineering) works on modeling of complex systems including microbial cell populations.
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Mike Henson's group (UMass Chemical Engineering) works on modeling of complex dynamical systems including microbial cell populations and avacular tumors.
December 13, 2004, at 02:50 PM
by 128.119.82.93
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December 13, 2004, at 01:31 PM
by TjBrunette
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Gierasch Research Group
Lila Gierasch group in (UMass Biochemistry) studies how amino acid sequence determines the three-dimensional structure of a protein. This problem is addressed in the laboratory through the study of how conformational preferences of model peptides guides folding. Detailed studies of in vitro folding of a predominantly b-sheet protein with a very simple topology are also carried out. Methods of use in all of the folding work include circular dichroism, fluorescence, and nuclear magnetic resonance.
December 11, 2004, at 04:29 PM
by 128.119.88.144
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Moon Kim's group (UMass Electrical and Computer Engineering) works on protein folding.
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Moon Kim's group (UMass Mechanical and Industrial Engineering) works on protein folding and dynamics.
December 10, 2004, at 11:03 PM
by 24.91.226.63
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Methods Research
These research groups are mostly interested in developing methodologies or technologies.
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Blanchard Research Group
Jeff Blanchard (UMass Microbiology) uses systems-level approaches to understand bacterial stress response networks related to host-pathogen interactions and the influence of global climate change on populations of marine cyanobacteria and communities of bacteria. Genome sequences and microarray data are important data sources.
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Erin Conlon (UMass Math & Statistics) works on microarray analysis methods.
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Erin Conlon (UMass Math & Statistics) works on microarray analysis methods.
Application Groups
These research groups are usually biology labs with a strong bioinformatics component.
Geobacter Project
The Geobacter project in Derek Lovley's lab (UMass Microbiology) is working on computational models of the Geobacter metabolism. Bioinformatics activities include genome assembly, annotation, and functional predictions from microarray expression experiments.
Blanchard Research Group
Jeff Blanchard (UMass Microbiology) uses systems-level approaches to understand bacterial stress response networks related to host-pathogen interactions and the influence of global climate change on populations of marine cyanobacteria and communities of bacteria. Genome sequences and microarray data are important data sources.
December 10, 2004, at 01:35 AM
by 24.91.226.63
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Illeana is a computational geometer at Smith who is working on protein folding.
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Illeana Steinu is a computational geometer at Smith who is working on protein folding.
Erin Conlon
Erin Conlon (UMass Math & Statistics) works on microarray analysis methods.
December 10, 2004, at 01:32 AM
by 24.91.226.63
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http://www.cs.smith.edu/~streinu/ Illeana Streinu
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December 10, 2004, at 01:32 AM
by 24.91.226.63
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Moon Kim's group (UMass Electrical and Computer Engineering) works on protein folding.
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Moon Kim's group (UMass Electrical and Computer Engineering) works on protein folding.
http://www.cs.smith.edu/~streinu/ Illeana Streinu
Illeana is a computational geometer at Smith who is working on protein folding.
December 10, 2004, at 01:30 AM
by 24.91.226.63
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David Kulp and Oliver Brock lead a small research group in the UMass Computer Science Department. Research topics include microarray resequencing by hybridization, protein folding, alternative splicing, and regulatory networks.
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David Kulp and Oliver Brock's group (UMass Computer Science) is interested in diverse topics including microarray resequencing by hybridization, protein folding, alternative splicing, and regulatory networks.
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Mike Henson's group in the UMass Department of Chemical Engineering works on modeling of complex systems including microbial cell populations.
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Mike Henson's group (UMass Chemical Engineering) works on modeling of complex systems including microbial cell populations.
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Hava Siegelmann (UMass Computer Science) simulates circadian oscillators by dynamic gene networks and collaborates on computational neurobiology.
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Hava Siegelmann (UMass Computer Science) simulates circadian oscillators by dynamic gene networks and collaborates on computational neurobiology.
Biomolecular Dynamics and Engineering Lab
Moon Kim's group (UMass Electrical and Computer Engineering) works on protein folding.
December 10, 2004, at 01:25 AM
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Hava Siegelmann (UMass Computer Science) simulates circadian oscillators by dynamic gene networks.
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Hava Siegelmann (UMass Computer Science) simulates circadian oscillators by dynamic gene networks and collaborates on computational neurobiology.
December 10, 2004, at 01:25 AM
by 24.91.226.63
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http://www.cs.umass.edu/~hava/ Hava Siegelmann
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December 10, 2004, at 01:24 AM
by 24.91.226.63
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Jeff Blanchard (UMass Microbiology) uses systems-level approaches to understand bacterial stress response networks related to host-pathogen interactions and the influence of global climate change on populations of marine cyanobacteria and communities of bacteria. Genome sequences and microarray data are important data sources.
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Jeff Blanchard (UMass Microbiology) uses systems-level approaches to understand bacterial stress response networks related to host-pathogen interactions and the influence of global climate change on populations of marine cyanobacteria and communities of bacteria. Genome sequences and microarray data are important data sources.
http://www.cs.umass.edu/~hava/ Hava Siegelmann
Hava Siegelmann (UMass Computer Science) simulates circadian oscillators by dynamic gene networks.
December 10, 2004, at 01:21 AM
by 24.91.226.63
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Mike Henson's group in the UMass Department of Chemical Engineering works on modeling of complex systems including microbial cell populations.
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Mike Henson's group in the UMass Department of Chemical Engineering works on modeling of complex systems including microbial cell populations.
Blanchard Research Group
Jeff Blanchard (UMass Microbiology) uses systems-level approaches to understand bacterial stress response networks related to host-pathogen interactions and the influence of global climate change on populations of marine cyanobacteria and communities of bacteria. Genome sequences and microarray data are important data sources.
December 09, 2004, at 11:41 PM
by 24.91.226.63
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December 09, 2004, at 11:41 PM
by 24.91.226.63
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Researchers and Research Groups
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David Kulp and Oliver Brock lead a small research group in the UMass Computer Science Department. Research topics include microarray resequencing by hybridization, protein folding, alternative splicing, and regulatory networks.
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David Kulp and Oliver Brock lead a small research group in the UMass Computer Science Department. Research topics include microarray resequencing by hybridization, protein folding, alternative splicing, and regulatory networks.
Michael Henson's Group]
Mike Henson's group in the UMass Department of Chemical Engineering works on modeling of complex systems including microbial cell populations.
December 09, 2004, at 11:37 PM
by 24.91.226.63
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David Kulp and Oliver Brock lead a small research group in the U Mass Computer Science Department. Research topics include microarray resequencing by hybridization, protein folding, alternative splicing, and regulatory networks.
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David Kulp and Oliver Brock lead a small research group in the UMass Computer Science Department. Research topics include microarray resequencing by hybridization, protein folding, alternative splicing, and regulatory networks.
December 09, 2004, at 11:36 PM
by 24.91.226.63
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Research Groups by Topic
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Research Groups
Bioinformatics Research Lab
David Kulp and Oliver Brock lead a small research group in the U Mass Computer Science Department. Research topics include microarray resequencing by hybridization, protein folding, alternative splicing, and regulatory networks.
December 09, 2004, at 11:20 PM
by 24.91.226.63
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Research Groups by Topic